ipyrad
0.9.15
The ipyrad ethos
Try it now
Installation
Getting Started: Files and Data Types
Getting Started: Demultiplexing
Assembly: Parameters
Assembly: Seven Steps
Assembly: Branching and Merging
Assembly: Tutorials
API: ipyrad assembly workflow
Eaton & Ree (2013) single-end RAD data set
Demultiplex on i7 outer barcodes
API: ipyrad analysis tools
ipa.treemix
ipa.pca
ipa.raxml
ipa.tetrad
ipa.structure
ipa.sratools
ipa.baba
ipa.bucky
ipa.window_extacter
ipa.treeslider 1
Required software
Short Tutorial:
Write the trees column to a file
Get Astral
Run Astral
Plot astral species tree
Plot astral species tree with quartet supports
Required software
Short Tutorial:
Longer tutorial
Cookbook
What’s next?
ipyrad
Docs
»
API: ipyrad assembly workflow
Edit on GitHub
API: ipyrad assembly workflow
¶
Eaton & Ree (2013) single-end RAD data set
Demultiplex on i7 outer barcodes
Read the Docs
v: 0.9.15
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